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IMO it does effect the SEO Rankings.
There is two things, if you are using the tracking code in your website then its not good.
but if publisher where you link is placed is using tracking code on his website to trace the hits then no problem in tracking..
One more thing, If you are proving advertising space on your website and using the tracking code to check the hits and referalls. then again its not the major problem..Go Ahead with this.
Hope this will help.
Kind Regards
Brijesh
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