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You'd probably want to talk to an accountant to see if you would be considered an employee or an independent contractor. If you're an employee, you'd just fill out a tax form like usual. If you're an independent contractor, you'd be entitled to a bunch of extra deductions, like perhaps a home office, office supplies, etc. I don't think the fact that your employer is outside of Canada makes a difference.
On another note, if you are not getting tax deducted at source, the CRA may in future years require you to make monthly or quarterly tax instalment payments, depending on how much you are earning.
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