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The one more important thing in that differs windows hosting platforms from linux is price. Since linux is free to distribute it is cheaper to host sites under this platform, sometimes this price differs significantly.
Also, as Matt has already said, windows hosting is needed to if you are using the MS applications in building or running your site. Linux doesn't support them, while windows platform supports every kind of internet software. Though linux is more popular, possibly because of less amount of bugs and easiness of administration.
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