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JavaScript can be used on many sites, including sites written in PHP. Usually you can’t embed JavaScript directly in your WordPress blog because of compatibility issues but with the help of containers of different kind, you can do it.
The integration of JavaScript and WordPress isn’t always the most trouble-free. JavaScript can be embedded in your WordPress SEO blog but you need to be careful so that it doesn’t cause functionality and performance issues.
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5 Reasons why Javascript can be a threat to your SEO blog
Some of the comments at the end of this article bring up some other reasons you should be cautious about using Javascript on your blog.