Webtrends is the better script. But if you're using different scripts, you'll always seen discrepancies.
For example, AWstats vs Webalizer:
www.internet-marketing-research.net/ archived/ptopic6328.html
Also, on BlueFind.com we have Webalizer, AWstats, and Urchin, and they aren't even close to each other. Urchin seems to be the most accurate.
Quote:
Our data:
Visits: 986
Duplicate IP's: 35 (visitors who visited more than once???)
Uniques: 915
Orders 56
Conversion rate 6.12%
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That sounds like the more accurate.